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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcaaaactcatcttcctagaagagattttcaacatgaattgtaagaaaaaaggctaatatggtttcttatactaaagtttatgcaattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCGATTTCAGATCATGCAACTAATCATACAGTACACAAAAGGTTGGTTAAGC

Basic information

species Arabidopsis thaliana
transcript AT1G73140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116392150|gb|EG434742.1|EG434742
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392146|gb|EG434738.1|EG434738
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392144|gb|EG434736.1|EG434736
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392195|gb|EG434787.1|EG434787
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392155|gb|EG434747.1|EG434747
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392153|gb|EG434745.1|EG434745
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392154|gb|EG434746.1|EG434746
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392180|gb|EG434772.1|EG434772
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392193|gb|EG434785.1|EG434785
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392178|gb|EG434770.1|EG434770
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392160|gb|EG434752.1|EG434752
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392171|gb|EG434763.1|EG434763
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392167|gb|EG434759.1|EG434759
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392200|gb|EG434792.1|EG434792
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
EST: gi|116392162|gb|EG434754.1|EG434754
EST:     AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAG                         GAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG
genomic: AGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGgtacatcaaa ... aattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaagaaaaaaggctaatatggtttcttatactaaagtttatgcaattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCGATTTCAGATCATGCAACTAATCATACAGTACACAAAAGGTTGGTTAAGC
                              tactaaa  putative branch site (score: 1)
                           ttatactaaagtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatcaaaactcatcttcctagaagagattttcaacatgaattgtaagaaaaaaggctaatatggtttcttatactaaagtttatgcaattgatcagGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCGATTTCAGATCATGCAACTAATCATACAGTACACAAAAGGTTGGTTAAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA