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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTATTTAGTCAAACAAACAACATGTCAACGAAATGGACGGCCTGATTCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaacaaaaagcatgtgttgtttcatgatctcagattcaaacttgcgcagtgtttaaaacctctgagatgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G73140.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116392150|gb|EG434742.1|EG434742
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392146|gb|EG434738.1|EG434738
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392144|gb|EG434736.1|EG434736
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392195|gb|EG434787.1|EG434787
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392155|gb|EG434747.1|EG434747
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392153|gb|EG434745.1|EG434745
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392154|gb|EG434746.1|EG434746
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392180|gb|EG434772.1|EG434772
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTCGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392193|gb|EG434785.1|EG434785
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392178|gb|EG434770.1|EG434770
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTCGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392160|gb|EG434752.1|EG434752
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392171|gb|EG434763.1|EG434763
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392167|gb|EG434759.1|EG434759
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392200|gb|EG434792.1|EG434792
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
EST: gi|116392162|gb|EG434754.1|EG434754
EST:     TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAG                         GTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT
genomic: TCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaaca ... gatgtttcagGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTTATTTAGTCAAACAAACAACATGTCAACGAAATGGACGGCCTGATTCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGgtaagaaacaaaaagcatgtgttgtttcatgatctcagattcaaacttgcgcagtgtttaaaacctctgagatgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA