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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGATGGTTTCCCTGCTGATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGTAACAATCAAAACGAAAACGTTATCTCATAGAGTTAGAgtaagttcttttaaaggattcatgctaagtgtttttggtgttttttactctatag

Basic information

species Arabidopsis thaliana
transcript AT1G72330.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G05130.1 (Glycine max), 5'ss of exon 7
---------------------------------------ACGTGATGGTTTCCCTGCTGATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGTAACAATCAA----AACGAAAACGTTATCTCATAGAGTTAGAgtaagttcttttaaag---gattcatgctaagtgt---ttttggtgttttttactctatag------
                                        ||||||||||| |||||  ||||  |||| |||||| |||||||||||||||| || || |||    || |    | |    |  ||  ||  | |  ||  |  | | |  | || |    | |||||   || | |   |||    |   |    |||||        
CAAGGGCTTGCGTGATACAATAGCTGCTGGAATTGAAGAGCGTGATGGTTTTCCTGCCAATCCTGATGACATTTTCATGACTGATGGTGCAAGCCCTGCTgtatgtctctactctacctttgatatttcctatttggttttaaagatgatggtgtagactttgtttcatttaaaatttgaatttaaaggccatcatttctatgttttcag

upper sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 7
---------------------------------------ACGTGATGGTTTCCCTGCTGATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGTAACAATCAAAA-CGAAAACGTTATCTCATAGAGTTAGAgtaagttcttttaaaggattcatgctaagtgtttttggtgttt---tttactctatag-------------------------------
                                        ||||||||||| ||| || |||||||||| ||||||||||||||||||||||| ||||| ||||   ||||   |      ||| | |  |    ||    |    |||||||| |    |    | |   ||| || | ||    |||     |||                                
CAAAGGATTGCGTGATACTATTGCTGCTGGAATTGAAGCTCGTGATGGTTTTCCTTCTAATCCAAATGACATTTTCTTGACTGATGGTGCAAGCCCAGCAgtaaatttcaatttctgttttgttttttttttttctttcttttgtatcttttaatgacaactaattgaaaatttgtgattttaaaatttcaagcataaataacaaatgtttttctccctctcttatcag