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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAGgtaacaccctagttctctctaatcggttttcgctaagttcttgcaacagattatgactaaaaagtctaatattgtatttgatcag

Basic information

species Arabidopsis thaliana
transcript AT1G72330.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G05130.1 (Glycine max), 5'ss of exon 12
TTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAGgt-aacaccctagttctctctaatcggttttcgctaagttcttgcaacaga-----ttatgactaaaaagtctaa----tattgtatttgatcag-----
| | || || || ||||| ||||| ||| |||| ||||| || ||||| ||||| |||||||||||||||||||| ||| | |||||||| ||||||||||| ||| || |   ||| |        ||| |  |  | |  |  |  |       || ||  | || |||  ||     |||| |  | ||        
TGCAGAAGTGAGGGAACAAATATATAAAGTGGCATCTGTCAACCTTTGCTCTAATATCTCTGGTCAAATTCTTGCAAGCTTGGTCATGAGTCCACCCAAGgttaactccttgcatctttaagtaaaatttccttttgggtaataaattaataattcttttgtttgaatagttaaaagagcattgaacataattcttacca

upper sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA16G01630.3 (Glycine max), 5'ss of exon 12
TTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAGgtaacaccctagttctctctaatcggttttcgctaagttcttgcaacagattat--gactaaaaagtctaatattgtatttgatcag--------------
| | || || || ||||| ||||| ||| |||| ||||| || ||||| ||||| |||||||||||||||||||||||| | |||||||| || || ||||| |   ||| |     |  | |    |||   |  ||| | |  |   ||| |     |  ||    ||| |  | ||| || ||               
TGCAGAAGTGAGGGAACAAATATATAAAGTGGCATCTGTCAACCTTTGCTCTAATATCTCTGGTCAAATTCTTGCTAGCTTAGTCATGAGTCCTCCTAAGgttaactccttgcatctttaagtataattttcttgtgttgtgggtagtaattctttagtttgaatagttaaaagagcatt-gaacacccgcttggttagag

upper sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 12
TTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAGgtaacaccctagttctctctaa-tcggttttcgctaagttcttgcaacagattatgactaaaaagtctaatattgtatttgatcag---------------
  |||||||  | ||||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||| |     |    |||| ||| |  |    | ||  | |  |        || || |||   | |   ||||| || ||  | |                
CGCTGATGTGCGGGAACAGATATACAAAGTGGCATCTGTGAATCTTTGTTCTAATATCACTGGTCAAATTCTTGCAAGCCTTGTGATGAGCCCACCCAAGgttaatttttttccctctataaattagcaaactctttgcttctttttttctttttgtctatttatttatatatt-tacttatttaccatttggagaccaga