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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttttaaaggattcatgctaagtgtttttggtgttttttactctatagGTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATTCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATG

Basic information

species Arabidopsis thaliana
transcript AT1G72330.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72330.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os10g25130.1 (Oryza sativa), 3'ss of exon 7
--------------------------------gtaagttcttttaa-----aggattcatgctaagtgt--ttttggtgttttttactc-------tatagGTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATTCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATG
                                | |  || ||| ||     ||||  ||     | | |  || || || | ||  | |       | ||||||||||||||||||||  | ||  | ||    ||||||||||| ||||| | ||| |||||||| ||||| |||||||| || || ||||| |||||||
gtaggaactttaccttctttttaaatcttactggacattttttgaataaacaggaagcagttcgaatctcattatgatgctattctccccctctgttttagGTTCACATGATGATGCAGTTACTGATAAGGAACGAGAAAGATGGCATTCTCTGCCCAATTCCTCAATATCCTTTGTACTCAGCCTCCATTGCTCTTCATG

upper sequence: AT1G72330.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv09s0002g00340.t01 (Vitis vinifera), 3'ss of exon 7
--------------------------------------------------------------------------gtaagttct---tttaaaggattcatgctaagtgtttttggtgttttttactctatagGTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATTCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATG
                                                                          || | ||     ||| ||| ||  ||   || ||||||   | |   |  ||    |||| || |||||||||||  | ||  | ||  | ||||| ||||| |||||||  || ||||||||||| || |||||||| ||||||||||  || ||||
gtaaatttcaatttctgttttgttttttttttttctttcttttgtatcttttaatgacaactaattgaaaatttgtgattttaaaatttcaagcataaataacaaatgtttt---tctccctctcttatcagGTCCATATGATGATGCAGTTACTGATAAGAACGGAGAAGGATGGAATTCTTTGTCCCATTCCTCAGTACCCTTTGTACTCTGCTTCAATTGTTCTACATG

upper sequence: AT1G72330.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: PP1S120_131V6.2 (Physcomitrella patens), 3'ss of exon 8
-----------------------gtaagttcttttaaaggat--tcatgctaagtgtttttggtgtttt-ttactcta------------------tagGTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATTCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATG
                         || ||  ||  || | |  | ||  ||| |  |  ||  | ||  | | ||||                   |||||||||||||||||||  | || ||||||||||| |||||||| ||| | |  || ||||| |||||||| |||||||| || || |||||  | ||||
gtaagtttctgaccatatgtttcaaaaattgcttcgaatggtcgtaattttaaattctcctgtcgcttcatcagtctaacgacataagatatacgacagGTTCACATGATGATGCAGTTGCTTTTGAGCTCAGAAAAAGATGGAATTTTGTGTCCTATTCCACAGTATCCTTTGTACTCTGCATCCATTGCGTTGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagttcttttaaaggattcatgctaagtgtttttggtgttttttactctatagGTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATTCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATG
                                        ttttttactct  CT-rich tract
                                        ttttttactctata  TA-rich tract