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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGATAATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacagatctttctaattttgacctaatttgttaaaattttgtccatagatctgagttttggttatgtgtgaag

Basic information

species Arabidopsis thaliana
transcript AT1G69460.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070570|gb|DR366327.1|DR366327
EST:     ATCCTCACGAAGGTCAAGCTTTGCCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|124781872|gb|EH871815.1|EH871815
EST:     TCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: TCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|86070574|gb|DR366331.1|DR366331
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|86070571|gb|DR366328.1|DR366328
EST:     ATCCTCACGAAGGTCAAGCTTTGCCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|124924801|gb|EL002862.1|EL002862
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCAC
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCAC
EST: gi|124915724|gb|EH989598.1|EH989598
EST:     TTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: TTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|125100388|gb|EL155856.1|EL155856
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTACTAATTCCGGTAACAATTACCATCACGCGGAACA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGT-CTAATTCCGGTAACAATTACCATCACGCGGAACA
EST: gi|86040056|gb|DR335811.1|DR335811
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|125111237|gb|EL162798.1|EL162798
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|86070575|gb|DR366332.1|DR366332
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|86070576|gb|DR366333.1|DR366333
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|125073100|gb|EL137556.1|EL137556
EST:     CCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: CCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: gi|86070569|gb|DR366326.1|DR366326
EST:     ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG                         GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGATAATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacagatctttctaattttgacctaatttgttaaaattttgtccatagatctgagttttggttatgtgtgaag

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