1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacacagatctttctaattttgacctaatttgttaaaattttgtccatagatctgagttttggttatgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTCGGCTGTTGAAGCAGGTGATTACATGGCTTGTT
species | Arabidopsis thaliana |
transcript | AT1G69460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCTCACGAAGGTCAAGCTTTGCCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|124781872|gb|EH871815.1|EH871815
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: TCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|86070574|gb|DR366331.1|DR366331
genomic: TCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|86070571|gb|DR366328.1|DR366328
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTGCCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|124924801|gb|EL002862.1|EL002862
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACEST: gi|124915724|gb|EH989598.1|EH989598
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCAC
EST: TTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|125100388|gb|EL155856.1|EL155856
genomic: TTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTACTAATTCCGGTAACAATTACCATCACGCGGAACAEST: gi|86040056|gb|DR335811.1|DR335811
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGT-CTAATTCCGGTAACAATTACCATCACGCGGAACA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|125111237|gb|EL162798.1|EL162798
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|86070575|gb|DR366332.1|DR366332
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|86070576|gb|DR366333.1|DR366333
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|125073100|gb|EL137556.1|EL137556
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: CCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAEST: gi|86070569|gb|DR366326.1|DR366326
genomic: CCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
EST: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAG GTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
genomic: ATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGgtaaacacag ... atgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCA
tgacctaatttgttaaaattttgtccatagatctgagttttggttatgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTCGGCTGTTGAAGCAGGTGATTACATGGCTTGTT
acctaat putative branch site (score: 3)
taatttgttaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacacagatctttctaattttgacctaatttgttaaaattttgtccatagatctgagttttggttatgtgtgaagGTGACGTCTAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTCGGCTGTTGAAGCAGGTGATTACATGGCTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC