1 5' 3' | 2 5' 3' | 3 5' 3' |
AATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatcttaacctcacatgtctctatggattgggatttgcttcactgaattgctttttcattgataacatctatctctaattgcaaaatgatcatcttgttcttctttgttatctcccttgcag
species | Arabidopsis thaliana |
transcript | AT1G56200.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT AACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCGEST: gi|164011633|gb|ES137622.1|ES137622
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCG
EST: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT AACGCGAAATGCAGTGAEST: gi|164060682|gb|ES130611.1|ES130611
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGA
EST: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT AACGCGAAATGCAGTGAEST: gi|164057501|gb|ES063111.1|ES063111
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGA
EST: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT AACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACEST: gi|86074863|gb|DR370620.1|DR370620
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTAC
EST: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT AACGCGAAATGCAGTGAAGGACAWACACAGACCGTTACTCGGGAGTCACCG
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatcttaacctcacatgtctctatggattgggatttgcttcactgaattgctttttcattgataacatctatctctaattgcaaaatgatcatcttgttcttctttgttatctcccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA