1 5' 3' | 2 5' 3' | 3 5' 3' |
gcaacaacggtacgctttctttctcactctattagctcgccgtatatttccttatgctctggctctgggttacgtttttttttatccctagggattttaaagatgaggtatcaaaatttggtgttgattgaaactttttaccgatcattttttggaccaagagtgtaaacctagctttttgtttgatatagCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAG
species | Arabidopsis thaliana |
transcript | AT1G56200.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATMG CAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAAAGCCAA
genomic: ATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAAT-Agcaacaacgg ... tttgatatagCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAAAGCCAA
tttaccgatcattttttggaccaagagtgtaaacctagctttttgtttgatatagCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAG
gtttgat putative branch site (score: 5)
ctttttgttt CT-rich tract
tttttgtttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaacaacggtacgctttctttctcactctattagctcgccgtatatttccttatgctctggctctgggttacgtttttttttatccctagggattttaaagatgaggtatcaaaatttggtgttgattgaaactttttaccgatcattttttggaccaagagtgtaaacctagctttttgtttgatatagCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG