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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcatcttaacctcacatgtctctatggattgggatttgcttcactgaattgctttttcattgataacatctatctctaattgcaaaatgatcatcttgttcttctttgttatctcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACT

Basic information

species Arabidopsis thaliana
transcript AT1G56200.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076356|gb|DR372113.1|DR372113
EST:     CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT                         AACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCG
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCG
EST: gi|164011633|gb|ES137622.1|ES137622
EST:     CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT                         AACGCGAAATGCAGTGA
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGA
EST: gi|164060682|gb|ES130611.1|ES130611
EST:     CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT                         AACGCGAAATGCAGTGA
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGA
EST: gi|164057501|gb|ES063111.1|ES063111
EST:     CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT                         AACGCGAAATGCAGTGAAGGACAAACACAGACCGTTAC
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTAC
EST: gi|86074863|gb|DR370620.1|DR370620
EST:     CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATT                         AACGCGAAATGCAGTGAAGGACAWACACAGACCGTTACTCGGGAGTCACCG
genomic: CAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttagtcatc ... tcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatctctaattgcaaaatgatcatcttgttcttctttgttatctcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACT
     ctctaat  putative branch site (score: 3)
                      tcatcttgttcttctt  putative PPT
               aaaatgat  TA-rich tract