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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAGgtgagattcatatgaaaattctgttctgtaaaatggtatttagtgtcctgaaaatatgcttaaagcaaccggttgggttgggtcttcactgacattgattgttgtatcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G55960.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125223774|gb|EL237859.1|EL237859
EST:     CCTTAATGAAAGAG                         GTTCCATCAGAGTTAGAAACT-GGACAGATAATGTCACAGGCTCCATGGAA
genomic: CCTTAATGAAAGAGgtgagattca ... gtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
EST: gi|86088157|gb|DR383916.1|DR383916
EST:     GTCATAGAACCCAAGGACGCATTCTATCTGCTGTCACCTTAATGAAAGAG                         GTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
genomic: GTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAGgtgagattca ... gtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
EST: gi|47828193|gb|CK117877.1|CK117877
EST:     GTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAG                         GTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
genomic: GTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAGgtgagattca ... gtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA