1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCGCACCATTAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAGgtcaaattcaaccaaaaaacctctctctccctctatctgtcgcaatttgttgttgcttctttacttatcattttgctctttggttactattag
species | Arabidopsis thaliana |
transcript | AT1G55960.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAG GAATGTGATCACAATAEST: gi|47828193|gb|CK117877.1|CK117877
genomic: CTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAGgtcaaattca ... ttactattagGAATGTGATCACAATA
EST: CTTGGAGATTGTGGCAAGGAAAGGACAAGAAGTTCTACTGTTTCACAAAG GAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTACGTGTAAGTEST: gi|124863032|gb|EH947469.1|EH947469
genomic: CTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAGgtcaaattca ... ttactattagGAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTACGTGTAAGT
EST: CTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAGG GAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTACGTGTAAGT
genomic: CTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAGgtcaaattca ... ttactattagGAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTACGTGTAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCACCATTAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAGgtcaaattcaaccaaaaaacctctctctccctctatctgtcgcaatttgttgttgcttctttacttatcattttgctctttggttactattag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT