1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagattcatatgaaaattctgttctgtaaaatggtatttagtgtcctgaaaatatgcttaaagcaaccggttgggttgggtcttcactgacattgattgttgtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGA
species | Arabidopsis thaliana |
transcript | AT1G55960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTTAATGAAAGAG GTTCCATCAGAGTTAGAAACT-GGACAGATAATGTCACAGGCTCCATGGAAEST: gi|86088157|gb|DR383916.1|DR383916
genomic: CCTTAATGAAAGAGgtgagattca ... gtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
EST: GTCATAGAACCCAAGGACGCATTCTATCTGCTGTCACCTTAATGAAAGAG GTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAAEST: gi|47828193|gb|CK117877.1|CK117877
genomic: GTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAGgtgagattca ... gtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
EST: GTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAG GTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
genomic: GTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAGgtgagattca ... gtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAA
cttaaagcaaccggttgggttgggtcttcactgacattgattgttgtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGA
tatcttc CT-rich tract
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattcatatgaaaattctgttctgtaaaatggtatttagtgtcctgaaaatatgcttaaagcaaccggttgggttgggtcttcactgacattgattgttgtatcttcagGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG