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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAGgtatttgcatgtcttttgcttgaggttgtatttgccaacttgtctcttctaactgattttttgatgtctgtctgtctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G55680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55680.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G12500.1 (Glycine max), 5'ss of exon 7
CATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAGgtattt-gcatgtcttttgcttgaggttgtatttgccaacttgtc--tcttctaactgattttttgatgtctgtct----gtctgcag
|| || ||| |||||||||| ||||||||  |  | || |||||||||||||||||||| |||||||| |||||||||||| |    || |||||| | |  |  ||| | || | |||| | |      | || |   | |    ||  | |||    ||  ||| |     | |  ||
CACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAGgtatatagttttccttctcctggtggttttgtcatttgatttatggatatcggcaccaagtttaatgtgattgttttctgatttttag

upper sequence: AT1G55680.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 6
CATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAGgtatttg-catgt-cttttgcttgaggttgtatttgccaacttgtctcttctaactgattttt-tgatgtctgtctgtctgcag
 |||| ||| ||||||| || || || |||||  | |  |||||||| |||||||| || |||||||||||||||||||||  ||   ||||||| |||   | | ||| | || |   | | | ||| ||| |   |   |  | || | |    |    | | |   | | |||
TATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAGgtacttggtgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcag