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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAGGCTTAGTATTACGAGAGAGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAACTCTGGGGAATCTTCAGGGAAAgtaagtcttccattctctatgtctcgtaggttttctttttcttctatatgtttcactaatattgggtttcaactgatacttatcatttgcttaatgaattcag

Basic information

species Arabidopsis thaliana
transcript AT1G55680.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G109039_T03 (Zea mays), 5'ss of exon 3
GGACAGGCTTAGTATTACGAGAGAGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAACTCTGGGGAATCTTCAGGGAAAgtaagtcttccattctctatgtctcgtaggttttct---ttttcttctatatgtttcactaatattgggtttcaactgatacttatcatttgcttaatgaattcag
|||   | | |  || ||  |  | | |||||||||  | ||| |||||||||| ||||||||||| ||||| ||||||||||| |||    |   ||| ||  | ||   | ||    ||     | || ||| |    |||  | |     | |   | | | | |  ||  | |                             
GGAGCAGATAAACATAACCCGTAAAAAATACAGACAGTCCAGATTAGAACAGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctcttactcctgttggaagtttggctttgtaaaattttctatccgcatgtgtttgacacttgccttggaatag---------------------------

upper sequence: AT1G55680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G048045_T01 (Zea mays), 5'ss of exon 3
GGACAGGCTTAGTATTACGAGAGAGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAACTCTGGGGAATCTTCAGGGAAAgtaagtcttccattctctatgtctcgtaggttttctttttcttctat--atgtttcactaatattgggtttcaactgatacttatcatttgcttaatgaattcag
|||   ||| |  || ||  |  | | ||| |||||  | ||| |||||||||| ||||||||||| ||||| ||||||||||| |||    |   ||| ||  | ||   | ||| | |||    || | ||| |   | ||||||  |  | |   | | | | |  ||  | |                             
GGAGCAGCTAAACATAACCCGTAAAAAATATAGACAGTCCAGATTAGAACAGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctcttactctttttgtaagttaagctttgtaaattttctatccacatgttgttgacaattgtcttggaatag---------------------------