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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctagagttttacaatcatggatttttagtttttcacacaacaattacatgcattctaatcaaggaacttcatctttttccacattgattttattttcagCATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G55680.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55680.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G12500.1 (Glycine max), 3'ss of exon 6
gtaagctctag--agttttacaatcatggatttttagtttttcacacaacaattacatgcattctaatcaaggaacttcatctttttccacattgattttattttcagCATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAG
|  || |   |  |  ||  |  |||| |   ||  ||| ||   |  | || ||    ||     ||||||  | || |||   |||    ||  |   ||   ||||| || ||| |||||||||| ||||||||  |  | || |||||||||||||||||||| |||||||| |||||||||||| |    || ||
gccagatgctgctaacttgtccctcataggaatt--gttcttggtattagaactatcaacagat--atcaag--attttatcaccttctttgttactggaatg--cagCACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAG

upper sequence: AT1G55680.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 5
gtaagctctagagtttt--acaatcatggattt-ttagtttttcacacaacaattacatgcattctaatcaaggaacttcatctttttccacattgattttattttcagCATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAG
|| |  |||    ||||  | || | || | || |||  |     |   | |||||  | || |   |   ||| | |||| |  |||    ||||        | ||| |||| ||| ||||||| || || || |||||  | |  |||||||| |||||||| || |||||||||||||||||||||  ||   ||||
gttacttctgtcatttttcataaccttgtagttattaaatcaggtcctgaaaattaattacactgagactgaggca-ttcacccctttt---attgg-----aatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatgcattctaatcaaggaacttcatctttttccacattgattttattttcagCATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAG
                                           ttttattttc  CT-rich tract
                                    acattgattttatttt  TA-rich tract