Sequence
atgc intronic sequence ATGC exonic sequencegtatgtctactctcacttcataaatatacaaaagaagaactgttgatcccatttgtcaataaaaaccgtgaatttcgtgtgcttcactggacagGTTTTTGTGTACCACAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGAACTCGAAGTAGACGATGCCTCGCAGT
Basic information
| species | Arabidopsis thaliana |
| transcript | AT1G53090.2 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G53090.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g52640.3 (Oryza sativa), 3'ss of exon 5
-gtatgtctactctcacttcataaatatacaaaagaagaactgttgatcccatttgtcaataaaaaccgtgaatttcgtgt--gcttcactggac---agGTTTTTGTGTACCACAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGAACTCGAAGTAGACGATGCCTCGCAGT
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tagaaattattttttataccatacgtgcctgtatattcttgcttggggtttaatattaattcaaatatctaactttcctttccatctcgttttacttcagGTTTTTGTCTACCACAAAGCATTTCCAATGCCAGTCTTGGCATATAAATTCAGTGTCACAGACCCAATATCAGGCCAGGAGATTGACGATCCATCACAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125274852|gb|EL288937.1|EL288937EST: GCAACAGGCTCTGAGACTAACGAG G-TTTTGTTGTACCACAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTT
genomic: GCAACAGGCTCTGAGACTAACGAGgtatgtctac ... cactggacagGTTTTTG-TGTACCACAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgttgatcccatttgtcaataaaaaccgtgaatttcgtgtgcttcactggacagGTTTTTGTGTACCACAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGAACTCGAAGTAGACGATGCCTCGCAGT
tgttgat putative branch site (score: 4)
cttcact putative PPT
atttgtcaataaaaa TA-rich tract
