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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatgattgattctctctttgatgtttttagtttcaattggaaaagttttgtcctttaattaagagtattgtctcctttgtctttacttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G53090.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G35320.1 (Glycine max), 5'ss of exon 4
ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatga--ttgattctctctttgatgtttttagttt----caattggaaaagttttgtcctttaattaagagtattgtctcctttgtctttacttttgcag
|  | |||||||| || ||| || | || || ||||||||||||||||| |||||||| ||||||||||||||||| ||||   |||| ||| |  |  ||| || |  || ||    |  ||  |  |||| | ||    ||  |  |||   |||||    |     |      || |  ||   |   |  ||||    
ACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGACCCTAAGAGTCGTCCAACACTTGGgtaattatcttcatcacatggtttttactttttgcttattacatatccaaattgtttgtgacatgtcccatttacctgccatctgaatgcctggttttct--

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G25240.1 (Glycine max), 5'ss of exon 4
ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatgattgattctctctttgatgtttttagtttcaattggaaaagttttgtcc------tttaattaagagta--ttgtctcctttgtctttacttttgcag
|| | |||||||| || ||| || |  | || ||||||||||||||||| ||||||||||||||| | |||||||||||||   |||| ||| | ||  ||| |  |||   |   ||       ||||   | |||| |    || || | | |      || |||||   |    |||| | | |||| ||   |||  |  
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaa--attttcttcatcacatgccttttacatatcaaatatccaaattgtttgcaaatgtttgaattacctgccacttgtatgcattgttttctttttccc--

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 4
ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatgattgattctctctttgatgtttttagtttcaattggaaaagttttgtcctttaattaagagtattgtctcctt---tg---tctttacttttgcag
|| | |||||||| || ||| || |  | || ||||||||||||||||| ||||||||||||||| | |||||||||||||   |||| ||| | ||  ||| |  |||   |   ||        |||   | | || |    || || | | |     ||   | ||   ||  |||   ||   | ||| ||||| |  
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaa--attctcttcatcacatgccctttacatatgaaatatccaaattattttcacatgttccaattaccttccacttgtatgcattgttttctttttcct

upper sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G35190.1 (Glycine max), 5'ss of exon 7
ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatgattgattctctctttgatgtttttagtttcaattggaaaagttttgtcctttaattaagagtattgtctcctttgtctttacttttgcag-------------
|  | |||||||| || ||| || | || || ||||||||||||||||| ||||| || ||||||||||||||||| |||||  |||| ||| |  |  ||| || ||   |||      ||  |||||||||||   ||| | |  || | |     ||||     |    | |||  | |   | |  ||  |              
ACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCTTTTTGTTTATGGTTACTGCATCCTGACCCTAGTGGTCGTCCAACACTCGGgtaattatc--ttcatcacatg--gtttttagttt---ttgcata--ttatatatccaaattgtttatgacatatcccatttacctgccatttgaatgccttttttttt