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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgcgtaagaagatttgatttttgttcttaactgctttgttttcttgagaaaactgatttgatgaatgttagtctttgtgcagCTATTCTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G53090.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53090.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------gtttgtgcgta-agaagatttga---tttttgttcttaactgc-tttgttttcttgagaaaactgatttgatgaatgttagtctt-tgtgcagCTATTCTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAG
                                                                        |||  || ||  || || |   | || |  ||||  |   ||| |||||||   | |||    |   ||| ||||   ||| || |||| |||||||| |  |   |||||||||||| |||   |||||||||||| |||| || ||||| |||||||| |||||| | ||  | || ||||| || |
gtctggaaatagttcaattcgtgtttgaatttttggattttttttttgtgtttgttttatttccttctaccagtggttagagctgacttcaaagtcttaggacttatgtctatttattttctttctacaacctgat--gtgagtgttgtacttgtgagcagTTATTCTGCACATTTAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTTGTTTGAGGCATCGAGTTCTTCCTCCTCAGTTGTTGTTGAAGTGGCCAAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactgctttgttttcttgagaaaactgatttgatgaatgttagtctttgtgcagCTATTCTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAG
                                            tctttgt  CT-rich tract
       tttgtttt  TA-rich tract