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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGCTGATACGTGGGCTGCAATGCCGGATAATAAGATGGTTGGGAAGGCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaaacttcttggaagcaaacatagtataaagcttgagactttactttggaagctataaaagtttggattttgcattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G52760.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080097|gb|DR375854.1|DR375854
EST:     GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAG                         ATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
genomic: GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaa ... tgcattgtagATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
EST: gi|116421129|gb|EG463721.1|EG463721
EST:     GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAG                         ATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
genomic: GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaa ... tgcattgtagATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
EST: gi|116469662|gb|EG512254.1|EG512254
EST:     GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAG                         ATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
genomic: GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaa ... tgcattgtagATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
EST: gi|116421128|gb|EG463720.1|EG463720
EST:     GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAG                         ATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
genomic: GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaa ... tgcattgtagATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
EST: gi|116434958|gb|EG477550.1|EG477550
EST:     GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAG                         ATATACAGGGAAGCCTAGAGTGGGAACAA
genomic: GCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaa ... tgcattgtagATATACAGGGAAGCCTAGAGTGGGAACAA
EST: gi|125002635|gb|EL074904.1|EL074904
EST:     TCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAG                         ATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC
genomic: TCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaa ... tgcattgtagATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAGGAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGGCTGATACGTGGGCTGCAATGCCGGATAATAAGATGGTTGGGAAGGCTATCAAGGACCCTGAAAAGCTTAAGATCATCGCTTCTAACCCGCAAAGgtactattaaacttcttggaagcaaacatagtataaagcttgagactttactttggaagctataaaagtttggattttgcattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG