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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtttacttcgttcctctgttttgataagataaattttccatctttgtgtaattgataagataatttacgatctttaggtgattaaagattggatttttatggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTCGTTGTAGTGATCCATATAAGGATCTTCCGGCTTTTCTGTTTGGTGAATC

Basic information

species Arabidopsis thaliana
transcript AT1G52760.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469662|gb|EG512254.1|EG512254
EST:     CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGG                         GTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTC
genomic: CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGGgttcgtttac ... tggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTC
EST: gi|116421128|gb|EG463720.1|EG463720
EST:     CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGG                         GTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTC
genomic: CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGGgttcgtttac ... tggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTC
EST: gi|164085362|gb|ES216156.1|ES216156
EST:     CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGG                         GTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTC
genomic: CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGGgttcgtttac ... tggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTC
EST: gi|164201157|gb|ES129484.1|ES129484
EST:     CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGG                         GTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTC
genomic: CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGGgttcgtttac ... tggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTC
EST: gi|116434958|gb|EG477550.1|EG477550
EST:     CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGG                         GTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTC
genomic: CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGGgttcgtttac ... tggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTC
EST: gi|164058178|gb|ES109513.1|ES109513
EST:     CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGG                         GTGATATGGNGAAAGTTGCAGCAACATCATTGGCTTT
genomic: CGCCGATCTTCTCGGTCACGGCCGTTCCGATGGTATCCGCTGCTACATGGgttcgtttac ... tggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagataatttacgatctttaggtgattaaagattggatttttatggttattagGTGATATGGAGAAAGTTGCAGCAACATCATTGGCTTTCTTCAAGCATGTTCGTTGTAGTGATCCATATAAGGATCTTCCGGCTTTTCTGTTTGGTGAATC
 aattgat  putative branch site (score: 4)
                                       tttttat  putative PPT
                                      atttttatggttatta  TA-rich tract