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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaatcttgtatttctttttggcctattctagttttgtttattgaactagttcacggaccatactctcgcactgctaagctatcagtaatagtgatacaagttcttatgtctggttacagATCGCCGTGTTCTAAACGAATATCAGGAGGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACGACACCGGGTTGTTTGGAATCTATGGTTGCTCG

Basic information

species Arabidopsis thaliana
transcript AT1G51980.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831013|gb|CK120697.1|CK120697
EST:     TGGCTCATTCTCTGCGGGAGGTCCTGGAAAAGGAATGCACTCGTGGCTTT                         ATCGCCGTGTTCTAAACGAATATCAGGAGGTTCAGTCATGCACTGCATTCA
genomic: TGGCTCATTCTCTGCGGGAGGTCCTGGAAAAGGAATGCACTCGTGGCTTTgtaagtcaaa ... ctggttacagATCGCCGTGTTCTAAACGAATATCAGGAGGTTCAGTCATGCACTGCATTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgcactgctaagctatcagtaatagtgatacaagttcttatgtctggttacagATCGCCGTGTTCTAAACGAATATCAGGAGGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACGACACCGGGTTGTTTGGAATCTATGGTTGCTCG
                   agtaata  TA-rich tract