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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgatttcgattatgattcttcttattgtcctttgattgataccatagaaaagattggtttcttattatgtgatgtattgtgattgtgtgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCTGTTGCGGAGACGAGTTCGTCAACGCCGGCTTACTTGAGCTGGTTGAGTG

Basic information

species Arabidopsis thaliana
transcript AT1G51980.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035239|gb|BP848244.2|BP848244
EST:     CAATCTTCGCAATGTATCGCAGGGCAGCTTCACGAGCCAGGGCTCTTAAG                         GGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCT
genomic: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatcctt ... tgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCT
EST: gi|164091223|gb|EL994204.1|EL994204
EST:     CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAG                         GGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGC
genomic: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatcctt ... tgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGC
EST: gi|152035137|gb|BP845856.2|BP845856
EST:     CAATCTTCGCCATGTATCGCACGGAAGCTTCACGAGCCAGGGCTCTTAAG                         GGAGTTCTTACTCGTAGTTTGAGACCAGGGCGTTATGCTAGTTCTAGTGCT
genomic: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatcctt ... tgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagaaaagattggtttcttattatgtgatgtattgtgattgtgtgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCTGTTGCGGAGACGAGTTCGTCAACGCCGGCTTACTTGAGCTGGTTGAGTG
               tttcttattat  TA-rich tract