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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaactttcacttttttcttatcaatcttttacaaaccaagatctagtgtcttaatattgtttatcgtgtttttgtttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAAAACAAACAATTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAA

Basic information

species Arabidopsis thaliana
transcript AT1G51980.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164173404|gb|EL996410.1|EL996410
EST:     CAAAGCCTTTGTACAATGGGTTCCTTTGGTAGATG                         TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGC
genomic: CAAAGCCTTTG-ACAATGGGTTCCTTTGG-AGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGC
EST: gi|47831013|gb|CK120697.1|CK120697
EST:     CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATG                         TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
genomic: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
EST: gi|164068776|gb|ES119341.1|ES119341
EST:     CCTTTGACAATGGGTTCCTTTGGAGATG                         TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
genomic: CCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
EST: gi|164044915|gb|ES069110.1|ES069110
EST:     CCTTTGACAATGGGTTCCTTTGGAGATG                         TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTAGAAAG
genomic: CCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTT-GAA-G
EST: gi|124886124|gb|EH965026.1|EH965026
EST:     CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATG                         TGTTGGACTGTTCCGAGCTATGACACAATAAG
genomic: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGG-CTGTTCCGAGCTATGACACAATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaaccaagatctagtgtcttaatattgtttatcgtgtttttgtttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAAAACAAACAATTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAA
                   tcttaat  putative branch site (score: 3)
 tttttgttttt  putative PPT
 tcttaatattgtttat  TA-rich tract