1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaacaactttcacttttttcttatcaatcttttacaaaccaagatctagtgtcttaatattgtttatcgtgtttttgtttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAAAACAAACAATTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAA
species | Arabidopsis thaliana |
transcript | AT1G51980.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCCTTTGTACAATGGGTTCCTTTGGTAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCEST: gi|47831013|gb|CK120697.1|CK120697
genomic: CAAAGCCTTTG-ACAATGGGTTCCTTTGG-AGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGC
EST: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAEST: gi|164068776|gb|ES119341.1|ES119341
genomic: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
EST: CCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAEST: gi|164044915|gb|ES069110.1|ES069110
genomic: CCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
EST: CCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTAGAAAGEST: gi|124886124|gb|EH965026.1|EH965026
genomic: CCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTT-GAA-G
EST: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGACTGTTCCGAGCTATGACACAATAAG
genomic: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGG-CTGTTCCGAGCTATGACACAATAAG
tacaaaccaagatctagtgtcttaatattgtttatcgtgtttttgtttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAAAACAAACAATTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAA
tcttaat putative branch site (score: 3)
tttttgttttt putative PPT
tcttaatattgtttat TA-rich tract