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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATCACGAACTCTTTCCTCCGTACGATTACCTTCTCAGATTCGCCGATTCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctccgttcaccaattacttgtttcgatttgatgctattgattttgagacaaaattcaattttgttcttgttttagttacttcgagtagcttca...

Basic information

species Arabidopsis thaliana
transcript AT1G43560.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072280|gb|DR368037.1|DR368037
EST:     TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|86072281|gb|DR368038.1|DR368038
EST:     TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|86088328|gb|DR384087.1|DR384087
EST:     TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|124955635|gb|EL030632.1|EL030632
EST:     CGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: CGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|125250326|gb|EL264411.1|EL264411
EST:     CGGAAGTGTTCAATCGTCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTTCAACTCTTTTGA
genomic: CGGAAGTGTTCAATCG-CCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTT-CAACTCTTTTGA
EST: gi|124956384|gb|EL031316.1|EL031316
EST:     AATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGTAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: AATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|124816780|gb|EH901646.1|EH901646
EST:     CTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: CTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|125284957|gb|EL299042.1|EL299042
EST:     TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTG
genomic: TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTG
EST: gi|86072279|gb|DR368036.1|DR368036
EST:     TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
genomic: TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|124921507|gb|EH995118.1|EH995118
EST:     TCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGACTTGTTGCAG
genomic: TCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATGATTTGTTGCAG
EST: gi|125209467|gb|EL224421.1|EL224421
EST:     TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACT                         GTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATG
genomic: TCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctc ... tttgatgcagGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCATCACGAACTCTTTCCTCCGTACGATTACCTTCTCAGATTCGCCGATTCGGAAGTGTTCAATCGCCGTCTTCGTCTACTCGCTTCGCTCCACTCACTgtgagttctccgttcaccaattacttgtttcgatttgatgctattgattttgagacaaaattcaattttgttcttgttttagttacttcgagtagcttca

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