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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGgtgagttttatgttaatactgttgttagtgattgctttaacacagtctatgtttcgtagttctctgtgtgttctgttttgtgtcataatcgatcaagact...

Basic information

species Arabidopsis thaliana
transcript AT1G32580.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125252283|gb|EL266368.1|EL266368
EST:     AGAACAAAGATTACGGAG                         CTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGA
genomic: AGAACAAAGATTACGGAGgtgagtttta ... tattgtgcagCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGA
EST: gi|164081695|gb|ES104112.1|ES104112
EST:     CTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAG                         CTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCC
genomic: CTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGgtgagtttta ... tattgtgcagCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCC
EST: gi|125304311|gb|EL318396.1|EL318396
EST:     AAAGATTACGGAG                         CTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACATA
genomic: AAAGATTACGGAGgtgagtttta ... tattgtgcagCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGA
EST: gi|164015103|gb|ES097756.1|ES097756
EST:     CTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAG                         CTGAGCTGTTTGTGAATGGAGAAATAGT
genomic: CTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGgtgagtttta ... tattgtgcagCTGAGCTGTTTGTGAATGGAGAAATAGT
EST: gi|116482448|gb|EG525040.1|EG525040
EST:     CTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAG                         CTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGA
genomic: CTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGgtgagtttta ... tattgtgcagCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGgtgagttttatgttaatactgttgttagtgattgctttaacacagtctatgtttcgtagttctctgtgtgttctgttttgtgtcataatcgatcaagact

- - - - - - - - - - - - - - - - - - - - - -  AAGAGA