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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATTGGTTGATTGTAATGGACAAACCTGGAGGCGAAAACGCTACTAAGCAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggtttctttcaatttcgttgattcattagttagaagaagcatttagttattgtaattaataatctcttgttgtttgtttaatcag

Basic information

species Arabidopsis thaliana
transcript AT1G32580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124714016|gb|EH805418.1|EH805418
EST:     ATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: ATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|86065047|gb|DR360804.1|DR360804
EST:     CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|124752466|gb|EH842596.1|EH842596
EST:     CTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: CTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|164116169|gb|ES157726.1|ES157726
EST:     CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGA
genomic: CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGA
EST: gi|86065048|gb|DR360805.1|DR360805
EST:     CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|86065046|gb|DR360803.1|DR360803
EST:     CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|125020666|gb|EL092935.1|EL092935
EST:     GTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: GTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|116482448|gb|EG525040.1|EG525040
EST:     CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
EST: gi|86065043|gb|DR360800.1|DR360800
EST:     CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAG                         TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT
genomic: CAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGgttagggttt ... gtttaatcagTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTT