1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttgttgttgttgttgttgttgttgtaatgttggcgatgtaatggatggttgttgattattgtgtgtgtgtttcag
species | Arabidopsis thaliana |
transcript | AT1G32580.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAAACTTGAAG GACTTCCTGGTGEST: gi|125089980|gb|EL148145.1|EL148145
genomic: TTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAA-CTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTG
EST: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACEST: gi|164173152|gb|ES165799.1|ES165799
genomic: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGAC
EST: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATEST: gi|163985430|gb|ES141411.1|ES141411
genomic: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTAT
EST: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTEST: gi|164015103|gb|ES097756.1|ES097756
genomic: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCT
EST: CAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAEST: gi|125161044|gb|EL188344.1|EL188344
genomic: CAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGA
EST: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTEST: gi|116482448|gb|EG525040.1|EG525040
genomic: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTT
EST: TTTTGGATTTGGTAGTGAGATTGATGAAGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAEST: gi|164201125|gb|ES031018.1|ES031018
genomic: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGA
EST: AGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAEST: gi|86065043|gb|DR360800.1|DR360800
genomic: AGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGA
EST: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAG GACTTCCTGGTGTTCTCTTCAT
genomic: TTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttg ... tgtgtttcagGACTTCCTGGTGTTCTCTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGgtatgtcttgttgttgttgttgttgttgttgtaatgttggcgatgtaatggatggttgttgattattgtgtgtgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG