Sequence
atgc intronic sequence ATGC exonic sequenceGATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAACAATGAAGCTGGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgacttcatatttgtatgaacatcatattggcatgaatacttatgattgctagctctagctatgataatgttattggataattttgttgaaattgtctgatttgttctcggtttaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G32150.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G01740.2 (Glycine max), 5'ss of exon 6
GATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAACAATGAAGCTGGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgacttcatatttgtatgaacatcatattggcatgaatacttatgattgctagc--tctagctatgataatgttattggataattttgttgaaattgtctgatttgttctcggtttaacag
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GATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtgttgtgttgatca-atctccttgaaatatgtaccctcttatctgaatcaaagcaatccagcttggccaaagaaag-acacactttgcttccaaatg------------------------
upper sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 7
GATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAACAATGAAGCTGGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgacttcatatttgtatgaacatcatattggcatgaatacttatgattgctagctctagctatgataatgtta-ttggataattttgttgaaattgtctgatttgttctcggtttaacag
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GATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACTGGGGACATCTGCTAATGGAATTCATTCAAAGAGgtaagatgtgttgtgtt-----gatca--atctcgtcagtgaattatgtgcccccttatttgaatcaaagcaatccagcttgggcaaagaaa--gacacactttgcttc----------------
upper sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 7
GATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAACAATGAAGCTGGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgacttcatatttgt---atgaacatcatattggcatgaatactta-tgattgctagctctagctatgataatgttattggataattttgttgaaattgtctgatttgttctcggtttaacag
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GATCAAAAGGAAGTTTGGGCAGTTTGAATATGCTTACAGGCAAGAATAATGAACTTGGTAAAACATCAGGAGCATCTGCTAATGGAGTGTATTCTAAAAGgtgcgctggctaatatatagcagatgaatatcatagttgtatggttttgtagttagtccttgc-ctagtgcc--tggtttaggtgagtgggtttgttgcctct-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164149078|gb|ES144582.1|ES144582EST: GGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAG TGCTGAGAGCGGTTCTGATGGATCAAGTGACGGAAGTGATGCAAATTCACA
genomic: GGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgact ... ggtttaacagTGCTGAGAGCGGTTCTGATGGATCAAGTGACGGAAGTGATGCAAATTCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAACAATGAAGCTGGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgacttcatatttgtatgaacatcatattggcatgaatacttatgattgctagctctagctatgataatgttattggataattttgttgaaattgtctgatttgttctcggtttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT