1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgcttttggtgtaaatttggtctagcaaagtgttttttgttagtgtcatgctttgatgtttaatgttttgtgtttttagGAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTCTGGCTTCCAG
species | Arabidopsis thaliana |
transcript | AT1G32150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCGCCTTCGACTTCTTCATCTGCTCCTGCTACTGTTGTTTCACAG GAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTCEST: gi|19876330|gb|AU237161.1|AU237161
genomic: CACCGCCTTCGACTTCTTCATCTGCTCCTGCTACTGTTGTTTCACAGgtttgctttt ... gtgtttttagGAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTC
EST: CTACACCGCCTTCGACTTCTTCATCTGCTCCTGCTACTGTTGTTTCACAG GAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTCT
genomic: CTACACCGCCTTCGACTTCTTCATCTGCTCCTGCTACTGTTGTTTCACAGgtttgctttt ... gtgtttttagGAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTCT
gcaaagtgttttttgttagtgtcatgctttgatgtttaatgttttgtgtttttagGAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTCTGGCTTCCAG
gtttaat putative branch site (score: 4)
tgttttt putative PPT
atgtttaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcttttggtgtaaatttggtctagcaaagtgttttttgttagtgtcatgctttgatgtttaatgttttgtgtttttagGAACCTTCTTCTGCTGTGAGTGCTGGAGTGGCTGTTACTCAAGATTGGTCTGGCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT