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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATTGTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAGgtaccgtctacaattgctcggtttggtatctatcagtgccaatgatttgtttgaattagatcattgagaagctaacttttctgattttgaatcacag

Basic information

species Arabidopsis thaliana
transcript AT1G26670.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164217240|gb|ES147326.1|ES147326
EST:     TCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG                         CTTCATGGTGTGGATGACGCC
genomic: TCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAGgtaccgtcta ... tgaatcacagCTTCATGGTGTGGATGACGCC
EST: gi|116443661|gb|EG486253.1|EG486253
EST:     TCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG                         CTTCATGGTGTGGATGACGCCATTGACAAGAGC
genomic: TCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAGgtaccgtcta ... tgaatcacagCTTCATGGTGTGGATGACGCCATTGACAAGAGC
EST: gi|164045954|gb|ES149601.1|ES149601
EST:     CCAAGATTTGAGTCAGCAACGCCTAAACCCTCCTTCATGCGCACAACAAG                         CTTCATGGTGTGGATGACGCC
genomic: CCAAGATTTGAGTCAGCAACGCC-AAACCCTCCTTCATGCGCACAACAAGgtaccgtcta ... tgaatcacagCTTCATGGTGTGGATGACGCC
EST: gi|116443658|gb|EG486250.1|EG486250
EST:     TCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG                         CTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCT
genomic: TCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAGgtaccgtcta ... tgaatcacagCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCT
EST: gi|125201954|gb|EL216908.1|EL216908
EST:     CCAAACCCTCCTTCATGCGCACAACAAG                         CTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCT
genomic: CCAAACCCTCCTTCATGCGCACAACAAGgtaccgtcta ... tgaatcacagCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCT