1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatttgcatttaacttgctttaatgttgttaccgttctgttctttcttttttaaaattaatatatatgcttctgtggtttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGTCTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGA
species | Arabidopsis thaliana |
transcript | AT1G26670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGGAAGATTGCTGAGATCAAGTCTGGAATAAACGAAGCTGATGTCTTG ATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTEST: gi|86077252|gb|DR373009.1|DR373009
genomic: AGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTGgtatttgcat ... ttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCT
EST: AGGGGAAGATTGCTCAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTG ATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTEST: gi|124860804|gb|EH945241.1|EH945241
genomic: AGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTGgtatttgcat ... ttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCT
EST: ATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTG ATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCEST: gi|125271895|gb|EL285980.1|EL285980
genomic: ATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTGgtatttgcat ... ttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGC
EST: A-GGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTG ATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGEST: gi|116443658|gb|EG486250.1|EG486250
genomic: AGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTGgtatttgcat ... ttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCG
EST: AGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTG ATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCT
genomic: AGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTGgtatttgcat ... ttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCT
gttctgttctttcttttttaaaattaatatatatgcttctgtggtttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGTCTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGA
aattaat putative branch site (score: 3)
tttttttgt putative PPT
ttctttcttttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgcatttaacttgctttaatgttgttaccgttctgttctttcttttttaaaattaatatatatgcttctgtggtttttttgtagATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGTCTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA