1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGATGAGCGACGTATTTGAAGGGTACGAGCGTCAATACTGCGAGCTCTCAACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGgtaaaatccagacgctcccgatttcggatcttgaacgcgagatcttcgaatttacctgattttagaaattcgaatcttcgaatttggggttattggagct...
species | Arabidopsis thaliana |
transcript | AT1G26670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAG AGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAAACGAAGCTGEST: gi|86077252|gb|DR373009.1|DR373009
genomic: AACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGgtaaaatcca ... gcttttatagAGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTG
EST: AACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAG AGGAGAAGAAGGGGAAGATTGCTCAGATCAAGTCTGGAATAGACGAAGCTGEST: gi|125017285|gb|EL089554.1|EL089554
genomic: AACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGgtaaaatcca ... gcttttatagAGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTG
EST: AACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAG AGGAGAAGAAGEST: gi|125276515|gb|EL290600.1|EL290600
genomic: AACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGgtaaaatcca ... gcttttatagAGGAGAAGAAG
EST: CTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAG AGGAGAAGAAGGGGAAGATTGEST: gi|116443658|gb|EG486250.1|EG486250
genomic: CTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGgtaaaatcca ... gcttttatagAGGAGAAGAAGGGGAAGATTG
EST: TCTCCAACGGAG AGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTG
genomic: TCTCCAACGGAGgtaaaatcca ... gcttttatagAGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGAGCGACGTATTTGAAGGGTACGAGCGTCAATACTGCGAGCTCTCAACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGgtaaaatccagacgctcccgatttcggatcttgaacgcgagatcttcgaatttacctgattttagaaattcgaatcttcgaatttggggttattggagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgctcccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgagatct