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gtaagtcatctttttcttcggtatttgagcttggatacattccagctaagaacaaagtgatagaaatcaaaactaactaatcctctcttgttatatctgaaaccatatgaagGTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCCGGCTTTACATCGAACAGTACGAAAAGGATGCTTCAAAAACCGGCCGAGAATCCCAGG
species | Arabidopsis thaliana |
transcript | AT1G23190.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTTCGAAGCACCAGGGAATCCGTTACTTGTTTGAAGACGGATCACGACTT GTTTTCCGTCTCTCTGGAAEST: gi|124859809|gb|EH944246.1|EH944246
genomic: TTTCGAAGCACCAGGGAATCCGTTACTTGTTTGAAGACGGATCACGACTTgtaagtcatc ... ccatatgaagGTTTTCCGTCTCTCTGGAA
EST: AGACGGATCACGACTT GTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCCGGCTTTAC
genomic: AGACGGATCACGACTTgtaagtcatc ... ccatatgaagGTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCCGGCTTTAC
tgatagaaatcaaaactaactaatcctctcttgttatatctgaaaccatatgaagGTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCCGGCTTTACATCGAACAGTACGAAAAGGATGCTTCAAAAACCGGCCGAGAATCCCAGG
aaatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcatctttttcttcggtatttgagcttggatacattccagctaagaacaaagtgatagaaatcaaaactaactaatcctctcttgttatatctgaaaccatatgaagGTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCCGGCTTTACATCGAACAGTACGAAAAGGATGCTTCAAAAACCGGCCGAGAATCCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG