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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATTGACGGTAACGCTAAACTGGTGTCAGTTGAAGACATTGTCCGCCAGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttgctaagtttggtgattgtaattataccatattatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaag

Basic information

species Arabidopsis thaliana
transcript AT1G23190.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 14
AAATATTGACGGTAACGCTAAACTGGTGTCAGTTGAAGACATTGTCCGCCAGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttgctaagtttggtgattgtaattataccatattatatggaagaaaca-gtacccttactgacatctcaaaatttgtctctaaag
  | |     ||    | ||| || ||  | |||||||| |||||||| ||||||||||| || || ||||| || |||||||| || || ||||||||||||     |  |              |   ||||   ||  | |||    | | |  || | ||    | |  | |   ||||| | | |||
GGACAACCTTGGAGGAGATAAGCTTGTCACTGTTGAAGATATTGTCCGTCAGCATTGGGCCACATATGGTCGCCATTATTACACACGCTATGACTATGAGgtacttcctttttttcacatgtgccttgcatatat-gtaccacatgtttcagatatatatcattctaaatacattag--tttgtttgtgaag

upper sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 14
-AAATATTGACGGTAACGCTAAACTGGTGTCAGTTGAAGACATTGTCCGCCAGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttgctaagtttggtgattgtaattataccatattatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaag-
 ||| ||  ||  | | |  || || ||  | ||||||||||| || ||||||||||||||||| || || || || ||||| ||||| || |||||||| |||  |     | |  ||      |    |  ||  || |  | ||  |||| ||||     || ||||  |||||  ||| |  || ||  
TAAAGATAAACT-TGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCATTATTATACTCGATATGACTATGAAgtatgatacaatcacattttctcctactttgttataatctgttttg--agaatcagt-----tagtgac--ctcaattttttttccttaaag

upper sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 14
-AAATATTGACGGTAACGCTAAACTGGTGTCAGTTGAAGACATTGTCCGCCAGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttgctaagtttggtgattgtaattataccata-ttatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaag
 ||| ||  ||  | | |  || || ||  | ||||||||||| || ||||||||||||||||| || || || || ||||| ||||| || |||||||| |||  |  | | ||      |   |   | | |   ||| ||   |   | || ||||     || |||| ||      ||| ||  |||||
TAAAGATAAACT-TGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCATTATTATACTCGATATGACTATGAAgtatga--tac-aatcgcattttctcctactttgttataattggttttgaaaatcagt-----tagtgacctcaatttttttttccttaaag

upper sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 15
AAATATTGACGGTAACGCTAAACTGGTGTCAGTTGAAGACATTGTCCGCCAGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttgctaagtttggtgattgtaattataccatattatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaag
  | |     |||   || || || ||  | |||||||| || || ||| | |||||||||||||| || || |||||||| ||||| || ||||||||||||  |  | |||    |  |  || |  || || || |    | | |      |||| | ||  | ||   |  |||||  |||  ||  
GGAAAACCTTGGTGGAGCAAAGCTTGTTACTGTTGAAGAAATAGTTCGCAATCATTGGGCTACCTATGGCCGCCACTATTATACTCGATATGACTATGAGgtatgatatacta--cctaat--tttttgttctagcaaa----aagaatcttggagtatcttt--taactggttcaaattattcttgaag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125045015|gb|EL117284.1|EL117284
EST:     AGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAG                         AATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCAT
genomic: AGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttg ... gtctctaaagAATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCAT