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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagttgctaagtttggtgattgtaattataccatattatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaagAATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCATTTGGTCAAATTGCAATCTTCAATTCCTGAAGTTAACAA

Basic information

species Arabidopsis thaliana
transcript AT1G23190.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125045015|gb|EL117284.1|EL117284
EST:     AGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAG                         AATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCAT
genomic: AGCATTGGGCTACCTACGGTCGTCACTATTACACTCGTTACGACTATGAGgtaaaagttg ... gtctctaaagAATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaagAATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCATTTGGTCAAATTGCAATCTTCAATTCCTGAAGTTAACAA
                          tactgac  putative branch site (score: 1)
                                          tttgtctct  putative PPT
                                    tcaaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaagttgctaagtttggtgattgtaattataccatattatatggaagaaacagtacccttactgacatctcaaaatttgtctctaaagAATGTAGACGCAGGTAAAGCTAAGGAACTGATGGAGCATTTGGTCAAATTGCAATCTTCAATTCCTGAAGTTAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG