1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTACTTATTCAATCGAACCGTCGTCTTCGTCATGGTTTCTCAGAGCTCAATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTgtaagtctctctaatgagctcggatttctcagattgtgttatatcaggaaaataacattgattataggttaaaggttaatgctttgtgtattctgattactatactgaacgatgatgatattgtttgttggtgtataagcttag
species | Arabidopsis thaliana |
transcript | AT1G23180.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACT CTTAGCTTAAAGATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTGEST: gi|116451237|gb|EG493829.1|EG493829
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTgtaagtctct ... ataagcttagCTTA----AA-GATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTG
EST: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTCTTEST: gi|116451237|gb|EG493829.1|EG493829
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCA--C-Tgtaagtctct ... ataagctt
EST: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTCTTEST: gi|116451237|gb|EG493829.1|EG493829
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCA--C-Tgtaagtctct ... ataagctt
EST: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTCTT
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCA--C-Tgtaagtctct ... ataagctt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTACTTATTCAATCGAACCGTCGTCTTCGTCATGGTTTCTCAGAGCTCAATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTgtaagtctctctaatgagctcggatttctcagattgtgttatatcaggaaaataacattgattataggttaaaggttaatgctttgtgtattctgattactatactgaacgatgatgatattgtttgttggtgtataagcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA