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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctctctaatgagctcggatttctcagattgtgttatatcaggaaaataacattgattataggttaaaggttaatgctttgtgtattctgattactatactgaacgatgatgatattgtttgttggtgtataagcttagCTTAAAGATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTGGTGATAGCTATGTGGGCTTGTTTGTGGGAATGCTCGGTTTGGACAACGATCCTC

Basic information

species Arabidopsis thaliana
transcript AT1G23180.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451239|gb|EG493831.1|EG493831
EST:     ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACT                         CTTAGCTTAAAGATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTG
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTgtaagtctct ... ataagcttagCTTA----AA-GATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTG
EST: gi|116451237|gb|EG493829.1|EG493829
EST:     ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTCTT                       
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCA--C-Tgtaagtctct ... ataagctt
EST: gi|116451237|gb|EG493829.1|EG493829
EST:     ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTCTT                       
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCA--C-Tgtaagtctct ... ataagctt
EST: gi|116451237|gb|EG493829.1|EG493829
EST:     ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACTCTT                       
genomic: ATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCA--C-Tgtaagtctct ... ataagctt


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgattactatactgaacgatgatgatattgtttgttggtgtataagcttagCTTAAAGATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTGGTGATAGCTATGTGGGCTTGTTTGTGGGAATGCTCGGTTTGGACAACGATCCTC
 ttctgat  putative branch site (score: 3)
      attactata  TA-rich tract