Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaacttcattttccgattcgttatactaaaacagtatcactcttttgagtataaataacatatcatatctctgtgcagGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAATATAGCTCTGGATAACAACTCGAGCCCTGAAAGTCTCTATGGAACCAGCT

Basic information

species Arabidopsis thaliana
transcript AT1G15800.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075564|gb|DR371321.1|DR371321
EST:     ATCTGCTCAAGCAACAAAGAGCAAGAAATGAGTCTTTAAAGAAACTCCAG                         GCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAAT
genomic: ATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAAACTCCAGgttaacttca ... ctctgtgcagGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactaaaacagtatcactcttttgagtataaataacatatcatatctctgtgcagGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAATATAGCTCTGGATAACAACTCGAGCCCTGAAAGTCTCTATGGAACCAGCT
                                          tatctct  CT-rich tract
                   ttttgagtataaataa  TA-rich tract