1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACCTCTTTTAGCGGCGGTGGAGGCGGTGCTGCTGCTGCCGTTGATGGATTTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAGgttcgttcgataatttccctttggtttatatgttcaacagtttttgaaacttctgctttactctgttctgtgtgtttgacaactatacccctcgggatgc...
species | Arabidopsis thaliana |
transcript | AT1G15800.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAG ATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAEST: gi|125300885|gb|EL314970.1|EL314970
genomic: TTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAGgttcgttcga ... tttgacgcagATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAAA
EST: TTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAG ATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAA
genomic: TTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAGgttcgttcga ... tttgacgcagATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTCTTTTAGCGGCGGTGGAGGCGGTGCTGCTGCTGCCGTTGATGGATTTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAGgttcgttcgataatttccctttggtttatatgttcaacagtttttgaaacttctgctttactctgttctgtgtgtttgacaactatacccctcgggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacccctc