1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaacctctttcccattttgttctcatataaaaaaagtccaaatctttaatataattcttgttttcttgaatcagGAACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAAACTCCAG
species | Arabidopsis thaliana |
transcript | AT1G15800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAAAGAGGAGGAGAGTGTGCTCTTAAAGGAAAGGAATGGCTTGAGAAAT GAACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAATGAG
genomic: TTAAAGAGGAGGAGAGTGTGCTCTTAAAGGAAAGGAATGGCTTGAGAAATgtaaaacctc ... cttgaatcagGAACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAG
ttctcatataaaaaaagtccaaatctttaatataattcttgttttcttgaatcagGAACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAAACTCCAG
ctttaat putative branch site (score: 4)
ttcttgttttctt putative PPT
atataaaaaaagtcca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacctctttcccattttgttctcatataaaaaaagtccaaatctttaatataattcttgttttcttgaatcagGAACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAAACTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA