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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTACGCCAAAGCAAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGgtaactatatgtctatattaagcacatgcaaataagatgttcatcttaagttgtttttttttttttttttcctaacttaaaatctatgctatgcaataattatag

Basic information

species Arabidopsis thaliana
transcript AT1G13300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13300.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 4
TAGCTACGCCAAAGCAAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGgtaactatatgtctatattaagcacatgcaaataagatgttcatcttaagttgtttttttttttttttttcctaacttaaaatctatgctatgcaataattatag
| ||||| |||||||| ||||||||  | ||||||||||||||| | || ||||||||||| |||||||||||||||||   ||||   || |  |      | ||||| |   | |   | ||| ||  ||||  ||||  |  ||| |  ||||  ||  || ||     ||  |     
TTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGgtttgtataaaactttcctcgaagta-gcaaaaactttatctttgttatgtcattttcattttggtaattcat--cttagtatggatcctgatggatgctagg--