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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGATGTGGGCAATACATCGAAGCCCTCGAAGAGGAACGTCGCAAGATTCATGTATTTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGgtatgtataaatatacaatgaaatatatttatctataaaaacatatatttgctacatcaaatgtaaaatttgtgatctatttttttctaaattaaataaaaattacaatatatttatgaaaattctagtatgtatagtaacgtacattttaccatttccatattatttcttaag

Basic information

species Arabidopsis thaliana
transcript AT1G13300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13300.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 1
GAGAGATGTGGGCAATACATCGAAGCCCTCGAAGAGGAACGTCGCAAGATTCATGTATTTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGgtatgtataaatatacaatgaaatatatttatctataaaaacatatatttgctacatcaaatgtaaaatttgtga-tctatttttttctaaattaaataaaaattacaatatatttatgaaaattctagtatgtatagtaacgtacattttaccatttccatattatttcttaag
 |||| |||    | || ||||||||  | || ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||  ||||||||     |     |         | ||| |||     |   | | ||  ||   | | || |  |  |  ||| |  || | | ||     |    |                                                                            
CAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtataccccatctctc---------tctttttcttccttatttttttttctctgttttagattttgaggtgttgagtggatgtgtgtcgtgggtttgcag---------------------------------------------------------------------------