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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttttgaatttatttatatgatttacattgttttcaaactatttgaataaatttgttgttgttatatagggtttttgagattttggttagtatattgatttttagtaaatgaattttgcagTAGCTACGCCAAAGCAAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAG

Basic information

species Arabidopsis thaliana
transcript AT1G13300.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13300.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 3'ss of exon 3
gtgcgttttgaatttatttatatgatttacattgttttcaaactatttgaataaatttgttgttgttatatagggtttttgagattttggttagtatattgatttttagtaaatgaattt-tgcagTAGCTACGCCAAAGCAAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAG
||| || |   ||   |  | |  |||   ||| |  | ||| | ||| || | | ||    |    | || || ||     || ||   || |   ||||||||||      |   ||  |||||| ||||| |||||||| ||||||||  | ||||||||||||||| | || ||||||||||| |||||||||||||||
gtgtgtat---atacttggagacaattgtgattctagttaaatttttttaacataatttccctca--aaatgggattgaattgaattaaatttg---attgatttttttccctttttttcctgcagTTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagggtttttgagattttggttagtatattgatttttagtaaatgaattttgcagTAGCTACGCCAAAGCAAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAG
                          tattgat  putative branch site (score: 3)
                    ttagtatattgatttt  TA-rich tract