1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACCCACAGCTGGTGTATCAACGAGTATGGAGATCTCACAAACGGAGCAGCCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAGgttggtgaaacgcattcttagaaaacgaaaatgtcatcacaatcctctaaaaactctctttttcttctgtcag
species | Arabidopsis thaliana |
transcript | AT1G12520.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACAATCCATTTCAAGATCAAACTGGCACAGAG CCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTEST: gi|164076695|gb|ES161206.1|ES161206
genomic: TACAATCCATTTCAAGATCAAACTGGCACAGAGgttggtgaaa ... cttctgtcagCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTT
EST: TTTCAAGATCAAACTGGCACAGAG CCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTEST: gi|124943787|gb|EL019945.1|EL019945
genomic: TTTCAAGATCAAACTGGCACAGAGgttggtgaaa ... cttctgtcagCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTT
EST: CCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAG CCATTGGGAGACCTGGGAACAEST: gi|124890473|gb|EH969375.1|EH969375
genomic: CCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAGgttggtgaaa ... cttctgtcagCCATTGGGAGACCTGGGAACA
EST: CCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAG CCATTGGGAGACCTGGEST: gi|124864020|gb|EH948457.1|EH948457
genomic: CCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAGgttggtgaaa ... cttctgtcagCCATTGGGAGACCTGG
EST: CCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAG CCATTGGGAGA
genomic: CCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAGgttggtgaaa ... cttctgtcagCCATTGGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCACAGCTGGTGTATCAACGAGTATGGAGATCTCACAAACGGAGCAGCCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAGgttggtgaaacgcattcttagaaaacgaaaatgtcatcacaatcctctaaaaactctctttttcttctgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA