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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttggtttaaagctttgaacttttgaaataccctatttccaatttgagctttttcgctttcctgattcgatgattaagtatttaagtagctgaatttgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTTGTAAGTCTTTCTCGTAATCCTGTATCTTTATACAACAATTTTTGGATTTGAGCTAGTGAGAACTTGTGTTGTG

Basic information

species Arabidopsis thaliana
transcript AT1G12520.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264550|gb|EL278635.1|EL278635
EST:     TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCA
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCA
EST: gi|125272106|gb|EL286191.1|EL286191
EST:     TTAGCTCTCCGATGGCGACTGCTCACACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCT
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCT
EST: gi|124705762|gb|EH797164.1|EH797164
EST:     TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTT
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTT
EST: gi|124778915|gb|EH868858.1|EH868858
EST:     TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTT
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgctttcctgattcgatgattaagtatttaagtagctgaatttgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTTGTAAGTCTTTCTCGTAATCCTGTATCTTTATACAACAATTTTTGGATTTGAGCTAGTGAGAACTTGTGTTGTG
                  atgattaagtatttaa  TA-rich tract