1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTGAGAACTTGTGTTGTGTGTTCCAGACTGAGTTTATGGTGGATATGACATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAGgtagtaggagaaacaactttattaatcgtcgtctgtttggttatgatttactttgttggtgcttattatgtgtaatggaaatttttaatcttgtaag
species | Arabidopsis thaliana |
transcript | AT1G12520.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGTGAAGAACAAATTAGAAACCATTGAAG GTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATAEST: gi|125192755|gb|EL207709.1|EL207709
genomic: TGCTGTGAAGAACAAATTAGAAACCATTGAAGgtagtaggag ... atcttgtaagGTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATA
EST: AACAAATTAGAAACCATTGAAG GTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATACTTGEST: gi|124791779|gb|EH881458.1|EH881458
genomic: AACAAATTAGAAACCATTGAAGgtagtaggag ... atcttgtaagGTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATACTTG
EST: ATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAG GTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTGEST: gi|164102028|gb|EL986592.1|EL986592
genomic: ATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAGgtagtaggag ... atcttgtaagGTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTG
EST: TTAATGCTGTGAAGAACAAATTAGAAACCATTGAAG GTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGEST: gi|124977924|gb|EL051193.1|EL051193
genomic: TTAATGCTGTGAAGAACAAATTAGAAACCATTGAAGgtagtaggag ... atcttgtaagGTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTG
EST: ATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAG GTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGT
genomic: ATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAGgtagtaggag ... atcttgtaagGTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAGAACTTGTGTTGTGTGTTCCAGACTGAGTTTATGGTGGATATGACATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAGgtagtaggagaaacaactttattaatcgtcgtctgtttggttatgatttactttgttggtgcttattatgtgtaatggaaatttttaatcttgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG