1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTTAACGTGGCCGCTACGCTTGTTTCTATCTACGGTGTTGACAGATGGGGACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaacaattactacttttatttatctctaagatctatataaacatatactaataaagatgtgttggttcactctctgtgtaattgtag
species | Arabidopsis thaliana |
transcript | AT1G11260.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAG GCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCTEST: gi|116433599|gb|EG476191.1|EG476191
genomic: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaaca ... gtaattgtagGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCT
EST: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAG GCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCTEST: gi|124740595|gb|EH831757.1|EH831757
genomic: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaaca ... gtaattgtagGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCT
EST: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAG GCTGTGGTTGCAG
genomic: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaaca ... gtaattgtagGCTGTGGTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTAACGTGGCCGCTACGCTTGTTTCTATCTACGGTGTTGACAGATGGGGACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaacaattactacttttatttatctctaagatctatataaacatatactaataaagatgtgttggttcactctctgtgtaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG