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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaacaattactacttttatttatctctaagatctatataaacatatactaataaagatgtgttggttcactctctgtgtaattgtagGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCTGGTGAGCTACCAAAGTGGTATGCTATAGTGGTTGTAACGTTCATTTGCA

Basic information

species Arabidopsis thaliana
transcript AT1G11260.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116479254|gb|EG521846.1|EG521846
EST:     GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAG                         GCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCT
genomic: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaaca ... gtaattgtagGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCT
EST: gi|116433599|gb|EG476191.1|EG476191
EST:     GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAG                         GCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCT
genomic: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaaca ... gtaattgtagGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCT
EST: gi|124740595|gb|EH831757.1|EH831757
EST:     GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAG                         GCTGTGGTTGCAG
genomic: GACGTCGGTTTCTCTTTCTTGAAGGTGGTACACAAATGCTTATATGCCAGgtaaggaaca ... gtaattgtagGCTGTGGTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatataaacatatactaataaagatgtgttggttcactctctgtgtaattgtagGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTAGACGGGACCCCTGGTGAGCTACCAAAGTGGTATGCTATAGTGGTTGTAACGTTCATTTGCA
             tactaat  putative branch site (score: 1)
     taaacatatactaata  TA-rich tract