1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCCAAACATGTTTGGATGCTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcattaaaaaaccttaattttaattacgttggtttagtttacaaataaccatccataatgtgtttctatcaaaattgatttttttttgtcgaaca...
species | Arabidopsis thaliana |
transcript | AT1G11260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAG GCTGTGCCACTGTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCTEST: gi|124907351|gb|EH981431.1|EH981431
genomic: TCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcatt ... ctatttacagGCTGTGCCACTGTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCT
EST: TCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAG GCTGTGCCACTGTACCTCTCTGAGATGGCTEST: gi|125288942|gb|EL303027.1|EL303027
genomic: TCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcatt ... ctatttacagGCTGTGCCACTGTACCTCTCTGAGATGGCT
EST: TCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAG GCTGTGCCACTGTACCTCTCTGAGATGGACTCCATACAAATACAGEST: gi|301502820|gb|HO208360.1|HO208360
genomic: TCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcatt ... ctatttacagGCTGTGCCACTGTACCTCTCTGAGATGG-CTCCATACAAATACAG
EST: TCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAG GCTGTGCCACTGTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCT
genomic: TCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcatt ... ctatttacagGCTGTGCCACTGTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCCAAACATGTTTGGATGCTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcattaaaaaaccttaattttaattacgttggtttagtttacaaataaccatccataatgtgtttctatcaaaattgatttttttttgtcgaaca
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